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What can I deduct when refinancing rental property. – The costs associated with obtaining a mortgage on rental property are amortized (spread out) over the life of the loan. For example, if it cost you $3,000 to refinance your 30-year mortgage, you’d be able to deduct $100 per year for the next 30 years. Other refinance-related expenses not directly related to the mortgage may also be deductible.